“Pretrained Protein Language Models Fine-Tuned with Convolutional Neural Network Outperform Existing Methods in Allergenic Protein/Peptide Prediction, Accommodating Missing and Nonstandard Residues”

https://pubmed.ncbi.nlm.nih.gov/38113537

The pLM4Alg models, which use pretrained protein language models fine-tuned with a convolutional neural network, achieve state-of-the-art performance in predicting allergenic proteins/peptides and can handle sequences with missing residues and nonstandard amino acid residues.